Updating Anaconda Enterprise Notebooks (AEN 4.1.0)¶
These instructions are for upgrading Anaconda Enterprise Notebooks (AEN) to the current version 4.1 from 4.0 ONLY.
For help upgrading from a version older than 4.0, see the AEN 4.0 upgrade instructions, and contact your enterprise support representative for help.
NOTE: Named Service Account functionality is available with Anaconda Enterprise Notebooks 4.0.0+ for new installations only. It is not available for upgraded installations. Contact your enterprise support rep for more information.
An upgrade to the Anaconda Enterprise Notebooks Platform requires all instances of the three service categories to be upgraded individually:
- AEN Server
- AEN Gateway
- AEN Compute
An installation of Anaconda Enterprise Notebooks typically consists of several Compute instances running on independent Compute Nodes, and multiple Gateways if there is more than one Data Center tied into AEN. More details can be found in the Overview.
The upgrade process requires that all AEN service instances be stopped, upgraded, and then restarted. These instructions describe how to perform this process.
Note: Any commands that call for the
root user can also be done
If you encounter any difficulty during the process, please refer to the Troubleshooting Guide which provides guidance on:
- configuration files
- log files
In the event you are unable to resolve an installation or upgrade problem please contact your enterprise support representative.
CAUTION: Make a tested backup of your installation before starting the upgrade. Upgrading to a higher version of AEN is not reversible. Any errors during the upgrade procedure may result in partial or complete data loss and require restoring data from backups.
IMPORTANT: TERMINATE ALL AEN APPS AND STOP ALL PROJECTS before starting the upgrade process.
Before upgrading each service on each host, perform the following operation:
Suspend the services on each of the nodes with the following commands:
sudo service wakari-server stop sudo service wakari-gateway stop sudo service wakari-compute stop
Set the AEN Functional ID (NFI) and AEN Functional Group (NFG), which are described in the installation instructions.
The NFI is the username of the AEN Service Account which is used to run all AEN services and is also the username of the AEN Admin account.
The NFG is the Linux group that includes the AEN Service Account, so all files and directories that have the owner NFI also have the group NFG.
When upgrading AEN, set the NFI and NFG to the NFI and NFG of the current installation.
The default NFI is “wakari”, and “aen_admin” or any other name may be used instead.
Set the NFI and NFG with these commands, replacing “wakari” if you are using another name:
export AEN_SRVC_ACCT="wakari" export AEN_SRVC_GRP="wakari"
NOTE: If you are using LDAP-based authentication, back up the configuration file:
After the Server has been upgraded, copy that file back into the same location as before the upgrade.
The following operations are all done on the Server host:
If you are using the search capabilities provided by ElasticSearch and a Java Runtime Environment (JRE 8):
Stop the ElasticSearch service:
sudo service elasticsearch stop
Remove any previous index:
sudo rm -rf /var/lib/elasticsearch/*
NOTE: You can choose to keep the old index but if you detect any issues with the search capabilities after the upgrade, you will need to perform the following steps to start with a clean index:
sudo service wakari-server stop sudo service elasticsearch stop sudo rm -rf /var/lib/elasticsearch/* sudo service elasticsearch start sudo service wakari-server start
Upgrade the Server:
pushd /tmp wget http://j.mp/aen-server-update-4_1_0 sudo -E -u $AEN_SRVC_ACCT /opt/wakari/miniconda/bin/conda install \ -p /opt/wakari/wakari-server \ --file aen-server-update-4_1_0 sudo -E -u $AEN_SRVC_ACCT /opt/wakari/miniconda/bin/conda install \ -p /opt/wakari/wakari-server \ --no-deps \ wakari-enterprise-server-conf-update=2.0.1 popd
sudo service elasticsearch start
Or, if you do not want to use the search features, edit your server’s
adding the line item:
Start the Server:
sudo service wakari-server start
Check that the Server is running properly:
sudo service wakari-server status
Finally, use your web browser to connect to AEN Server, using the correct protocol (http or https), hostname, and port number.
Repeat the following operations on each Gateway host.
Upgrade the Gateway:
pushd /tmp wget http://j.mp/aen-gateway-update-4_1_0 sudo -E -u $AEN_SRVC_ACCT /opt/wakari/miniconda/bin/conda install \ -p /opt/wakari/wakari-gateway \ --file aen-gateway-update-4_1_0 sudo -E -u $AEN_SRVC_ACCT /opt/wakari/miniconda/bin/conda install \ -p /opt/wakari/wakari-gateway \ --no-deps \ wakari-enterprise-gateway-conf-update=2.0.1 popd
Start the Gateway:
sudo service wakari-gateway start
Check that the Gateway is running properly:
sudo service wakari-gateway status
Finally, use your web browser to connect to the Gateway, using the correct protocol (http or https), hostname, and port number.
Repeat the following operations on each host where an AEN Compute service is running.
The processes killed with
killall are run by the
$AEN_SRVC_ACCT user, so
they can be killed as root with
sudo killall or killed as the
$AEN_SRVC_ACCT user with
sudo -u $AEN_SRVC_ACCT killall. These example
commands show the
sudo killall option.
Check for any
ps aux | grep wakari-indexer
NOTE: If you stopped all the projects, you will not see any wakari-indexer processes running.
Terminate any remaining
sudo killall wakari-indexer
Check for any AEN apps (gateone, workbench, viewer, terminal, notebook) processes running:
ps aux | grep wk-app-gateone ps aux | grep wk-app-workbench ps aux | grep wk-app-viewer ps aux | grep wk-app-terminal ps aux | grep notebookwrapper
NOTE: If you stopped all the projects, you will not see any AEN app processes running.
Terminate any remaining AEN apps processes that you find:
sudo killall wk-app-gateone sudo killall wk-app-workbench sudo killall wk-app-viewer sudo killall wk-app-terminal sudo killall notebookwrapper.py
Verify the contents of
/opt/wakari/anaconda/.condarc. Modify it properly to contain the following entries (and possibly others if you customized the .condarc file).
NOTE: Modify the file as the AEN_SRVC_ACCT user (or be sure to keep the same ownership).
channels: - https://conda.anaconda.org/t/<TOKEN>/anaconda-nb-extensions - r - https://conda.anaconda.org/wakari - defaults create_default_packages: - anaconda-client - ipykernel auto_update_conda: false
NOTE: Contact your enterprise support representative to get your
<TOKEN>for the Anaconda channel referenced above.
NOTE: Replace <TOKEN> with the actual token from your enterprise support representative.
Install necessary dependencies:
sudo yum groupinstall "X Window System" -y sudo yum install libXrender libXext libSM -y sudo yum install git -y
Remove any pinning to specific conda versions from Anaconda Enterprise Notebooks 4.0.0:
sudo rm /opt/wakari/anaconda/conda-meta/pinned
Modify the ownership of the package cache:
sudo chown -R $AEN_SRVC_ACCT:$AEN_SRVC_GRP /opt/wakari/anaconda/pkgs
Upgrade the Compute service.
NOTE: From AEN 4.1.0 and above, wakari-app-gateone is deprecated and no longer supported, so we remove that package with conda here:
pushd /tmp wget http://j.mp/aen-compute-update-4_1_0 wget http://j.mp/aen-anaconda-update-4_1_0 sudo -E -u $AEN_SRVC_ACCT /opt/wakari/anaconda/bin/conda install \ -p /opt/wakari/wakari-compute \ --file aen-compute-update-4_1_0 sudo -E -u $AEN_SRVC_ACCT /opt/wakari/anaconda/bin/conda remove \ -p /opt/wakari/wakari-compute \ wakari-app-gateone sudo -E -u $AEN_SRVC_ACCT /opt/wakari/anaconda/bin/conda install \ --no-deps \ -p /opt/wakari/wakari-compute \ wakari-enterprise-compute-conf-update=2.0.1
NOTE: When upgrading the wakari-compute environment nbextensions you may see ImportError warnings. As long as the Validating message is OK, the ImportError warnings are harmless (just a consequence of the post-link presence on those packages).
Upgrade Anaconda in the root environment:
sudo -E -u $AEN_SRVC_ACCT /opt/wakari/anaconda/bin/conda install \ -p /opt/wakari/anaconda conda=4.2.9 sudo -E -u $AEN_SRVC_ACCT /opt/wakari/anaconda/bin/conda remove \ -p /opt/wakari/anaconda \ spyder ipython-we pandoc keyring \ ecdsa util-linux sphinx_rtd_theme \ mklfft numbapro numbapro_cudalib \ ncurses nlopt paramiko \ wakari-client conda-manager conda-api\ conda_analysis_package sudo rm /opt/wakari/anaconda/lib/terminfo sudo -E -u $AEN_SRVC_ACCT /opt/wakari/anaconda/bin/conda install \ -p /opt/wakari/anaconda \ --file aen-anaconda-update-4_1_0 popd
Initialize the root environment to prime the package cache:
sudo -E -u $AEN_SRVC_ACCT /opt/wakari/anaconda/bin/conda create \ -p /opt/wakari/testenv \ --clone root
and test the offline cloning step with:
sudo -E -u $AEN_SRVC_ACCT /opt/wakari/anaconda/bin/conda create \ -p /opt/wakari/testenvoffline \ --clone root --offline
finally remove those test environments with:
sudo rm -rf /opt/wakari/testenv sudo rm -rf /opt/wakari/testenvoffline
Run the upgrade_410 script to make your old projects compatible with the 4.1.0 codebase:
pushd /tmp wget http://j.mp/upgrade_410 chmod a+x upgrade_410 ./upgrade_410 popd
Start the Compute service:
sudo service wakari-compute start
Verify the Compute service is running properly:
sudo service wakari-compute status
- You can now start the projects and start using the AEN apps.
- If you have a customized default environment, you may choose to upgrade it depending on the needs of your users.
NOTE: Upgrading the
default environment at
/opt/wakari/anaconda/envs/default does NOT automatically upgrade the
default environment in the users pre-existing projects. For
pre-existing projects, the upgrade (if it is requested) should be done on a
- If you did not stop all your projects before upgrading, then the first time you start an app you will see an error page requesting you to restart the app. Restart the app to complete the upgrade and use it again.
- If you still see old apps or the old IPython logo in the notebook app, reload the page to reset the browser cache.